Yatish Patil

Senior Bioinformatician @Velsera

Pune, IN

With many years of experience in bioinformatics, I specialize in designing, developing, operating, and deploying next-generation analysis pipelines and high-throughput sequencing data using WDL and Nextflow on HPC clusters.Technical Skills:NGS Data Analysis: Proficient in RNA-Seq, DNA-Seq, and microarray data analysis, including preprocessing, QC, clustering analysis, differential gene expression analysis, MRD data analysis and downstream statistical analysis using R. Experienced with annotation databases such as dbSNP, ClinVar, COSMIC, and ExAC.Pipeline Development: Skilled in building and automating bioinformatics pipelines using Python, Perl, R, shell scripting (Linux), docker, WDL, and Nextflow, along with AWS services (S3, EC2, Lambda/SAM, Batch).Software and Tools: Proficient with many bioinformatics tools, including IGV visualizer, snpEff, fastx toolkit, sra-toolkit, FastQC, Tophat, Novoalign, GATK, samtools, bcftools, vcftools, picard, BWA, bowtie, CuffDiff, Cufflink, HTSeq, DESeq, DESeq2, EdgeR, and limma-voom etc.Machine Learning: Completed a certificate course in machine learning by IBM, enhancing my ability to integrate machine learning techniques into bioinformatics workflows.Management and Leadership Skills:Project Management: Led multiple bioinformatics projects from inception to completion, ensuring timely delivery and quality outcomes. Familiar with Agile processes and tools like Jira and Confluence for team collaboration.System Administration: Installed, upgraded, and maintained bioinformatics software on HPC clusters, ensuring optimal performance for projects.My overall experience also involves analysing cancer data from TCGA, ICGC, RNASeq, Nanostring, and Microarray, focusing on clinical information and data representation. I am dedicated to advancing the field of bioinformatics through continuous learning and collaboration.

University of Pune

Master of Science (MSc)

University of Mumbai

Bachelor of Science (BSc)