Shiyi Yin
Staff Scientist, Bioinformatics @Takara Bio USA, Inc.
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WORK HISTORY
Staff Scientist, Bioinformatics @Takara Bio USA, Inc.
San Jose, CA, US
Product development:(1) SMART-Seq mRNA Long Read- Marketing collateral such as Technical White paper(2) Deepvariant: training custom models using AWS GPUs- Use Sparkrunner to scale beyond instance resource limitations- Manage IAM role/policyBioinformatics Pipeline development:(1) Nextflow pipeline development with Docker, Unit test (NF-test), convert legacy shell scripts into Nextflow pipeline- Feature request implementation- Bugfix based on customer feedbacks(2) Manage Github repos: branch protection rules, lint actions, CI test automation, PR code review(3) Software development: deliver software product to end-users, collaborate with technical writers to release quick start user manual, JIRA (roadmapping tool), Gitflow- Errors handling using errorStrategy (User fastq and meta mismatch error to raise Exception in python and conditionally disable retry in nextflow)
EDUCATION
Case Western Reserve University School of Medicine
Doctor of Philosophy - PhD, Genetics and Genomic Sciences
Harvard Extension School
Bioinformatics
The Hong Kong Polytechnic University
Bachelor of Science - BS, Applied biology with biotechnology
ABOUT SHIYI YIN
Skilled and dedicated genomics scientist with 8 years in genomics research • Proven…
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