Shivani M.
Data Scientist | Machine Learning Engineer | Python • NLP • Data Visualization | AI for Healthcare & Environmental Insights
- Role
- Data Scientist Intern at UConn Health
- Location
- Hartford, CT, US
- LinkedIn followers
- 500 followers
About Shivani M.
I help organizations turn raw, fragmented data into dashboards, reports, and insights…
Experience
Data Scientist Intern
Jun 2025 — Present · Farmington, CT, US
Processed and analyzed 28+ RNA-Seq samples to study tumor size variation in wild-type and knockout mice using FastQC, STAR, and HTSeq on the Xanadu HPC cluster.• Filtered low-quality genes to improve transcriptomic signal using DESeq2 and edgeR, followed by PCA and clustering for pattern discovery.• Conducted pathway enrichment analysis across genes using the clusterProfiler package to identify functional markers of tumor growth and immune response.• Engineered and deployed deep learning-based segmentation pipelines for Imaging Mass Cytometry (IMC) data using PyTorch, U-Net, and Grad-CAM, increasing cell classification accuracy by 35%.• Managed 750GB+ of high-throughput sequencing data and ensured clean, HIPAA-compliant data transfer pipelines for NIH-collaborated projects.• Collaborated with cross-functional teams to design reproducible workflows and assist in explainable AI development for cancer research diagnostics.• Currently optimizing an end-to-end IMC pipeline to streamline preprocessing, segmentation, and analysis phases across multiple imaging experiments.
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