Samuel Simoni
Research Associate (Technical-scientific Staff, Category d) @Università Di Pisa
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WORK HISTORY
Research Associate (Technical-scientific Staff, Category d) @Università Di Pisa
EDUCATION
Università degli Studi di Perugia
Master of Science (M.Sc.), Agricultural and Environmental Biotechnology
Università di Pisa
Doctor of Philosophy - PhD, Agriculture, Food and Environment
Università degli Studi di Verona
Bachelor's degree, Biotechnology
ABOUT SAMUEL SIMONI
Bioinformatics scientist (PhD) with 6 years of hands-on NGS experience across Illumina datasets and end-to-end Oxford Nanopore workflows (MinION/PromethION), from library preparation to pipeline development, data analysis, and troubleshooting.Published 23 peer-reviewed international articles. Delivered 100+ hours of bioinformatics training, supporting students and researchers from different backgrounds in applying NGS workflows to their projects and interpreting results effectively.Technical expertise:End-to-end Oxford Nanopore workflows (MinION, PromethION; library preparation, sequencing, data analysis & troubleshooting) · RNA-seq · WGS · Variant Calling (GATK, VarScan2) · Metagenomics (QIIME2) · Transcriptome assembly · Genome annotation · Sequence alignment (BWA, HISAT2) · Genomic data processing (SAMtools, BEDTools) · Functional analysis · Bioinformatics pipelines · Python · R · Bash · Linux · HPC/SLURMItalian (native) · English C1+ · 23 peer-reviewed publications
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