Nathan Dunn

About Nathan Dunn

My true passion lies in empowering scientists, clinicians, and cross-functional teams through effective communication, robust organizational practices (e.g, agile, CI/CD), strong technical leadership, and rapid software development.I am an experienced scientific software engineer with more than 20 years of experience working with full-stack software (Java, Groovy, Spring, Node, Python, JavaScript / TypeScript, React / Angulur / Vue.js), but also working with C++ and CI/CD systems as well.As Technical Lead and Principal Software Engineer II at Roche, over three years I have been dedicated mixed on-shore and off-shore team developing and custom secondary analysis modules for Next-Generation Sequencing (NGS) workflows. Leveraging expertise in C++, Python, Docker, and CI/CD pipelines, the team has prioritized delivering high-performance and scalable solutions for genomic analysis.Previous roles at Berkeley Labs, Amyris, Truveta, and others have further expanded skills in integrating Elasticsearch, PostgreSQL, and workflow infrastructure into genomic and healthcare data systems. These were largely React.js front-end, but Python, Java, and C# in the backend backend. I\'m committed to providing solutions for scientists and clinicians via collaboration to further to develop impactful tools that advance science.

Experience

1. Technical Lead - Principal Software Engineer Ii

   罗氏公司

   Aug 2022 — Present · San Francisco, CA, US

   Bioinformatics Software Engineering (Prinicipal II) Lead. Led a mixed on-shore and off-shore team to develop and optimize custom secondary analysis modules (demux, clustering, consensus, callers) and supported a reference workflow. Modules were developed in C++, Python, Java utilizing Docker, the JFrog Artifactory and Github Actions for CI/CD.

Education

• University of Oregon

  Doctor of Philosophy - PhD, Computer Science

  2001 — 2006

• Oregon State University

  Bachelor of Science - BS, Chemical Engineering

  1992 — 1997

• University of Washington

  Master of Science - MS, Chemical Engineering

  1997 — 1998

Skills

• C++
• Java
• Linux
• Javascript
• Xml
• Software Engineering
• Sql
• Jsp
• Machine Learning
• Ajax
• Computer Science
• J2ee
• Web Services
• Hibernate
• Oop
• Spring
• Jquery
• Artificial Intelligence
• Shell Scripting
• Object Oriented Design
• Grails
• Confluence
• Ontologies
• Perl
• Algorithms
• Postgresql
• Java Enterprise Edition
• Spring Framework
• Python
• Programming
• Software Development
• Unix
• Web Applications
• Subversion