John P.
Software Developer (Genomics) @Bc Centre For Disease Control
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WORK HISTORY
Software Developer (Genomics) @Bc Centre For Disease Control
Vancouver, BC, CA
Designing and building custom software modules to facilitate complex genomic data workflows (Python, Bash, Pandas, SQL)- Providing routine upgrades and maintenance to our organization\'s public GitHub repositories, which are utilized regularly by other provincial and federal health agencies- Developing and maintaining services that automate the analysis and reporting of complex workflows across a variety of pathogens (Python, SQL)- Prototyping and testing genomics applications on the cloud to explore benefits and feasibility of platform migration (AWS)
EDUCATION
Western University
Master of Science - MSc, Bioinformatics
St. Augustine Catholic High School
OSSD, Science and Mathematics
Western University
Bachelor of Science - BSc, Data Science
Western University
Bachelor of Medical Sciences (BMSc), Physiology, Pathology and Related Sciences
Western University
Master of Science - MS, Bioinformatics
ABOUT JOHN P.
Python (7 yr)| Git & Bash (7 yr)| R (6 yr)| Nextflow (Groovy)(4 yr)| SQL (4 yr)- Bioinformatics workflows, software development (7 yr)| Next-generation sequencing (NGS)(4 yr)- Data cleaning, engineering, visualization (7 yr)| Pandas, Jupyter (5 yr)- HPC, cluster computing (7 yr)- Statistical analysis, machine learning, NumPy, optimization (5 yr)| Scikit-learn (2 yr)- Containers (Docker, Singularity, Apptainer)(4 yr)- Automation, APIs, web servers, SQL & noSQL databases (4 yr)- Cloud computing (AWS)(1 yr)(Developer Certification)- LLMs, custom chatbots (1 yr)John has over 4 years of experience developing analytical workflows and software packages (Python, Nextflow, Bash, R) to process, analyze, model, and visualize large biological datasets. Proficient in bioinformatics workflows, software development, high-performance computing (HPC), containerization, database management, data analysis, visualization, statistics, and machine learning. Passionate about leveraging cloud computing and data science to drive innovation in the health and biotech industries.
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