Deepak Bhayal

About Deepak Bhayal

As a Bioinformatics Engineer, Experienced Associate with a demonstrated history of working in the bioinformatics industry. Strong research professional with skilled in Next Generation Sequencing, Programming to solve Biological phenomenon.> Developed automated pipeline for WE[G]S using python.> Developed automated workflow for RNA-Seq using Nextflow.> R, AWS EC2, Docker, nfcore, nextflow, snakemake.Skilles:• Programming: R, Bash, Python• workflows: Nextflow, snakemake.• container: Docker • Statistical test : Chi-square, T test, Z test, ANNOVA etc• Mathamatical models.• NGS tools: FastQC, fastp, trimmomatic, Trimgalore, Multiqc, BWA, Bowtie2, STAR Aligner, Velvet, Prokka, SPAdes, Samtools, bamtools, BCFtools, vcftools, Picard tools, GATK, Qualimap, vcfstats, VEP, IGV, Annovar, PLINK, Freebyes.• Databases: gnomad, clinvar, COSMIC, dbSNP, dbNSFP, omim, drugbank, pubmed, tcga etc.• Bioinformatics Tools: Standalone BLAST, Clustal Omega, GenBank, UCSC Genome Browser, TCGA, Cytoscape, AutoDock.NGS Applications:• Metagenome: Mathur, QIIME2, DADA2, phyloseq.• Whole Genome: FastQC, trimgalore, BWA, GATK, ANNOVAR.• Whole Exome• RNA-Seq: FASTp, STAR, Qualimap, featurerCount, DESeq, EdgeR, pathway enrichment.• Targeted sequencing• Panels data analysis

Experience

1. Bioinformatician

   Vgenomics

   Jan 2024 — Present · Noida, IN

   Nanopore based pipeline development for WES.WES pipeline development for rare disease specific.WES pipeline development for somatic. analysis.Automation for clinical reporting (ReactJS + HTML + CSS.Developement of pipeline for metagenome : nanopore based.Validation of pipelines.

Education

• Swami Vivekanand Higher secondary school, Punjapura, Dewas, India

  Intermediate

  2013 — 2014

• School of Biotechnology, Devi Ahilya University, Indore

  Master's degree

  2017 — 2019

• Govt. Holkar Science College A.B. Road, Indore

  Bachelor's degree

  2014 — 2017

• Govt Boys Higher secondary school, Piplya Buzurg, Khargone, India

  10th

  2011 — 2012