Daniel Cuevas
Senior Bioinformatics Scientist
- Role
- Senior Bioinformatics Scientist at Exact Sciences
- Location
- San Diego, CA, US
- LinkedIn followers
- 500 followers
About Daniel Cuevas
My recent experience has been focused on all stages of the product development life cycle: from early conception and biomarker identification to algorithm development and clinical validation. I excel in small and large collaborative R&D teams of molecular biologists, software engineers, and statisticians. My roles often involve model development, data analysis, data management, pipeline development, and software management. Software development experience ranges from quick prototyping to late-stage software design and testing following ISO standards and compliance. My passion for discovery lives alongside enabling my teams to analyze and understand their own data. Creating low barrier tools with high data accessibility expands engagement, increases development, and enhances cooperation for all team members.== Relevant Skills ==• Proficient languages: Python, R, Perl, bash, PHP, SQL• Intermediate languages: Java, C++, MATLAB• Sequencing: QC, alignment, bisulfite sequencing• Microbiome: 16S, metagenomics, annotation• Automated analysis pipeline reports• Multivariate statistical analysis, regression, classification• Model parameter optimization, data exploration• Supervised/unsupervised machine learning techniques• Cluster computing, AWS• Prototyping and ad-hoc analysis
Experience
Senior Bioinformatics Scientist
Feb 2023 — Present · San Diego, CA, US
Bioinformatics R&D, NGS liquid biopsy cancer diagnostics, variant calling, biomarker discovery, data analysis, algorithm development, software developmentProducts:• Oncodetect - Molecular Residual Disease (MRD)
Education
San Diego State University
Bachelor of Science - BS, Computer Science
2005 — 2011
San Diego State University
Doctor of Philosophy - PhD, Bioinformatics and Computational Biology
2012 — 2018
Claremont Graduate University
Doctor of Philosophy - PhD, Bioinformatics and Computational Biology
2012 — 2018
Skills
- Bioinformatics
- Perl
- Python
- R
- Molecular Biology
- Computational Biology
- Matlab
- Life Sciences
- Sql
- Linux
- Algorithms
- Dna Sequencing
- Java
- Javascript
- Php
- Css
- Unix Shell Scripting
- Machine Learning
- C
- Microbiology
- Dna
- Html
- Statistics
- Biochemistry
- Genetics
- C++
- Sequence Alignment
- Django
- Sequencing
- Xml
- Databases
- Shell Scripting
- Computer Science
- Genomics
- Lifesciences
- Data Mining
- Sequence Analysis
- Agile Application Development
- High Performance Computing
- Microarray Analysis
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