Andres Plata Stapper

About Andres Plata Stapper

Scientist | AI & Computational Biology Specialist | LLMs for Scientific Research | Precision Medicine I am a scientist driven to uncover and harness the molecular mechanisms that govern lineage specification, development, and disease—translating this knowledge into precision medicine innovations. My work integrates advanced artificial intelligence and computational biology to accelerate biomedical discovery and therapeutic development.AI & Large Language Models (LLMs)I specialize in designing and evaluating large language models (LLMs) tailored for scientific research, particularly in the life sciences. My focus lies in leveraging LLMs to augment research, extract insights from vast biomedical literature, and enhance human-AI collaboration for knowledge discovery. I am deeply interested in the societal impacts of AI and how human-AI interactions can shape the future of healthcare and science. Computational Biology & Multi-OmicsMy computational biology expertise spans the analysis of multi-omics data—including spatial omics, RNAseq, DNAseq, and single-cell analysis. These tools are core to my work in developing therapeutics and medicines across oncology, cardio-metabolic diseases, and immunotherapies.Scalable Bioinformatics PlatformsI have implemented and deployed computational tools in both server-based and cloud computing environments, enabling scalable solutions for biomedical and space science applications. I bring experience in leading cross-functional teams and managing complex projects across academic and industrial settings.Collaborative InnovationMy unique strength lies in generating creative ideas and forging strong interdisciplinary collaborations. I thrive at the intersection of biology, AI, and medicine—where complex problems demand innovative, collaborative solutions. MissionI am committed to advancing precision medicine through AI-powered innovation, and to helping deliver transformative treatments for patients suffering from incurable diseases. My ultimate goal is to make a lasting impact on human health through science, technology, and empathy.

Experience

1. Principal Scientist

   Amgen

   Oct 2023 — Present · South San Francisco, CA, US

Education

• Stanford University School of Medicine

  Postdoctoral Scholar, Computational Biology, Embryonic Development of the Inner Ear

  2013 — 2017

• Stanford University School of Medicine

  postdoctoral scholar, Computational Biology, embryonic development

• Florida State University

  Doctor of Philosophy (PhD), Molecular Evolution - Molecular Genetics

  2007 — 2013

• Florida International University

  Master of Science (MSc), Molecular Biology and Microbiology

  2000 — 2003

• Stanford University

  Postdoctoral , Computational Biology and Inner ear development

  2013 — 2017

Skills

• High Dimensional Data Analysis
• Rt-Pcr
• Rna
• Confocal Microscopy
• Cloning
• Biomarker Discovery
• Microbiology
• "Precision Medicine"​
• University Teaching
• Biofilms
• Stem Cell Research
• Space Biology
• Complexity Theory
• Unix
• Computational Biology
• Github
• Pcr
• Rna Ish
• Molecular Biology
• Laboratory Management
• Machine Learning
• Next Gen
• Molecular Statistics
• Sm-Fish
• Microfluidics
• Scientific Computing
• Microscopy
• R
• Fluidigm
• Illumina
• Science
• Genomics
• Evolution
• Python
• Cluster Analysis
• Matlab
• Image Analysis
• Biology
• 3d Modelling
• Qrtpcr